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Xanespy 0.4.0 documentation
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A
active_group (xanespy.xanes_frameset.XanesFrameset attribute)
align_frames() (xanespy.xanes_frameset.XanesFrameset method)
all_energies() (xanespy.edges.Edge method)
annotate_spectrum() (xanespy.edges.Edge method)
(xanespy.edges.KEdge method)
(xanespy.edges.LEdge method)
apply_internal_reference() (in module xanespy.xanes_math)
(xanespy.xanes_frameset.XanesFrameset method)
apply_median_filter() (xanespy.xanes_frameset.XanesFrameset method)
apply_mosaic_reference() (in module xanespy.xanes_math)
apply_references() (in module xanespy.xanes_math)
apply_transformations() (xanespy.xanes_frameset.XanesFrameset method)
aps_old1_regex (xanespy.xradia.XRMFile attribute)
B
big_axes() (in module xanespy.plots)
binning() (xanespy.xradia.XRMFile method)
broadcast_reverse() (in module xanespy.utilities)
C
calculate_maps() (xanespy.xanes_frameset.XanesFrameset method)
calculate_mean_frames() (xanespy.xanes_frameset.XanesFrameset method)
calculate_signals() (xanespy.xanes_frameset.XanesFrameset method)
calculate_whitelines() (xanespy.xanes_frameset.XanesFrameset method)
clear_caches() (xanespy.xanes_frameset.XanesFrameset method)
close() (xanespy.txmstore.TXMStore method)
(xanespy.xradia.XRMFile method)
cluster_fit (xanespy.txmstore.TXMStore attribute)
cmap (xanespy.xanes_frameset.XanesFrameset attribute)
columns (xanespy.utilities.shape attribute)
components() (xanespy.xanes_frameset.XanesFrameset method)
contrast_mask() (in module xanespy.xanes_math)
CreateGroupError
crop_frames() (xanespy.xanes_frameset.XanesFrameset method)
crop_image() (in module xanespy.xanes_math)
CuKEdge (class in xanespy.edges)
Curve (class in xanespy.fitting)
D
data_group() (xanespy.txmstore.TXMStore method)
data_name (xanespy.xanes_frameset.XanesFrameset attribute)
data_tree() (xanespy.txmstore.TXMStore method)
(xanespy.xanes_frameset.XanesFrameset method)
DataFormatError
DataNotFoundError
DatasetExistsError
decode_aps_params() (in module xanespy.importers)
decode_ssrl_params() (in module xanespy.importers)
Detector (class in xanespy.beamlines)
DetectorPoint (class in xanespy.beamlines)
direct_whitelines() (in module xanespy.xanes_math)
downsample_array() (in module xanespy.xanes_math)
draw_colorbar() (in module xanespy.plots)
draw_histogram_colorbar() (in module xanespy.plots)
dual_axes() (in module xanespy.plots)
E
E_0 (xanespy.edges.CuKEdge attribute)
(xanespy.edges.Edge attribute)
,
[1]
(xanespy.edges.FeKEdge attribute)
(xanespy.edges.GeKEdge attribute)
(xanespy.edges.NCACobaltKEdge attribute)
(xanespy.edges.NCACobaltLEdge attribute)
(xanespy.edges.NCANickelKEdge attribute)
(xanespy.edges.NCANickelLEdge attribute)
(xanespy.edges.OKEdge attribute)
Edge (class in xanespy.edges)
edge (xanespy.xanes_frameset.XanesFrameset attribute)
edge_mask (xanespy.txmstore.TXMStore attribute)
edge_mask() (xanespy.xanes_frameset.XanesFrameset method)
edge_range (xanespy.edges.CuKEdge attribute)
(xanespy.edges.Edge attribute)
,
[1]
(xanespy.edges.FeKEdge attribute)
(xanespy.edges.GeKEdge attribute)
(xanespy.edges.NCACobaltKEdge attribute)
(xanespy.edges.NCACobaltLEdge attribute)
(xanespy.edges.NCANickelKEdge attribute)
(xanespy.edges.NCANickelLEdge attribute)
(xanespy.edges.OKEdge attribute)
endtime() (xanespy.xanes_frameset.XanesFrameset method)
(xanespy.xradia.XRMFile method)
energies (xanespy.txmstore.TXMStore attribute)
(xanespy.xanes_frameset.XanesFrameset attribute)
energies() (xanespy.xradia.TXRMFile method)
energy (xanespy.beamlines.DetectorPoint attribute)
(xanespy.beamlines.ZoneplatePoint attribute)
energy() (xanespy.xradia.XRMFile method)
Extent (in module xanespy.utilities)
extent (xanespy.xanes_frameset.XanesFrameset attribute)
extract_signals_nmf() (in module xanespy.xanes_math)
extract_signals_pca() (in module xanespy.xanes_math)
F
FeKEdge (class in xanespy.edges)
FileExistsError
FilenameParseError
filenames (xanespy.txmstore.TXMStore attribute)
fit_kedge() (xanespy.xanes_frameset.XanesFrameset method)
fit_linear_combinations() (xanespy.xanes_frameset.XanesFrameset method)
fit_parameters (xanespy.txmstore.TXMStore attribute)
fit_spectra() (in module xanespy.fitting)
(xanespy.xanes_frameset.XanesFrameset method)
fitting_param_names() (xanespy.xanes_frameset.XanesFrameset method)
foreach() (in module xanespy.utilities)
fork_data_group() (xanespy.txmstore.TXMStore method)
(xanespy.xanes_frameset.XanesFrameset method)
frame_mask (xanespy.xanes_frameset.XanesFrameset attribute)
frame_shape() (xanespy.xanes_frameset.XanesFrameset method)
frame_source() (xanespy.txmstore.TXMStore method)
FrameFileNotFound
frames (xanespy.xanes_frameset.XanesFrameset attribute)
frameset_names() (xanespy.txmstore.TXMStore method)
FrameSourceError
FramesPool (class in xanespy.xanes_math)
G
Gaussian (class in xanespy.fitting)
GeKEdge (class in xanespy.edges)
get_component() (in module xanespy.utilities)
get_dataset() (xanespy.txmstore.TXMStore method)
get_frames() (xanespy.txmstore.TXMStore method)
GroupKeyError
guess_params() (in module xanespy.xanes_frameset)
(xanespy.fitting.Curve method)
(xanespy.fitting.KCurve method)
(xanespy.fitting.Line method)
GuessParamsError
gui_viewer() (xanespy.xanes_frameset.XanesFrameset method)
H
has_dataset() (xanespy.txmstore.TXMStore method)
has_representation() (xanespy.xanes_frameset.XanesFrameset method)
hdf_path() (xanespy.xanes_frameset.XanesFrameset method)
HDFScopeError
horizontal (xanespy.utilities.Pixel attribute)
horizontal_bin (xanespy.xradia.XRMFile attribute)
I
image_data() (xanespy.xradia.XRMFile method)
image_dtype() (xanespy.xradia.XRMFile method)
image_shape() (xanespy.xradia.XRMFile method)
image_stack() (xanespy.xradia.TXRMFile method)
import_aps32idc_xanes_file() (in module xanespy.importers)
import_aps32idc_xanes_files() (in module xanespy.importers)
import_aps4idc_sxstm_files() (in module xanespy.importers)
import_aps8bm_xanes_dir() (in module xanespy.importers)
import_aps8bm_xanes_file() (in module xanespy.importers)
import_cosmic_frameset() (in module xanespy.importers)
import_frameset() (in module xanespy.importers)
import_nanosurveyor_frameset() (in module xanespy.importers)
import_ssrl_xanes_dir() (in module xanespy.importers)
import_stxm_frameset() (in module xanespy.importers)
intensities (xanespy.txmstore.TXMStore attribute)
intensity_mean (xanespy.txmstore.TXMStore attribute)
is_in_energy_range() (in module xanespy.xanes_math)
is_kernel() (in module xanespy.utilities)
is_ref_corrected (xanespy.xradia.XRMFile attribute)
is_valid() (xanespy.xradia.XRMFile method)
iter_indices() (in module xanespy.xanes_math)
K
k_edge_jump() (in module xanespy.xanes_math)
k_edge_mask() (in module xanespy.xanes_math)
KCurve (class in xanespy.fitting)
KEdge (class in xanespy.edges)
L
L3Curve (class in xanespy.fitting)
l_edge_mask() (in module xanespy.xanes_math)
label_particles() (xanespy.xanes_frameset.XanesFrameset method)
latest_data_name (xanespy.txmstore.TXMStore attribute)
latexify() (in module xanespy.plots)
LEdge (class in xanespy.edges)
Line (class in xanespy.fitting)
line_spectra() (xanespy.xanes_frameset.XanesFrameset method)
linear_combination_parameters (xanespy.txmstore.TXMStore attribute)
linear_combination_residuals (xanespy.txmstore.TXMStore attribute)
linear_combination_sources (xanespy.txmstore.TXMStore attribute)
LinearCombination (class in xanespy.fitting)
LMOMnKEdge (class in xanespy.edges)
load_cosmic_files() (in module xanespy.importers)
M
magnification_correction() (in module xanespy.importers)
make_subplots() (in module xanespy.plots)
map() (xanespy.xanes_math.FramesPool method)
map_data (xanespy.xanes_frameset.XanesFrameset attribute)
map_names() (xanespy.txmstore.TXMStore method)
map_range (xanespy.edges.GeKEdge attribute)
(xanespy.edges.OKEdge attribute)
mask() (xanespy.edges.Edge method)
(xanespy.edges.KEdge method)
(xanespy.edges.LEdge method)
mean_frame() (xanespy.xanes_frameset.XanesFrameset method)
merge_stores() (in module xanespy.txmstore)
minimum_shape() (in module xanespy.importers)
monitor_sector8() (in module xanespy.beamlines)
mosaic_columns (xanespy.xradia.XRMFile attribute)
mosaic_rows (xanespy.xradia.XRMFile attribute)
mp_map() (in module xanespy.utilities)
N
name (xanespy.edges.CuKEdge attribute)
(xanespy.edges.Edge attribute)
(xanespy.edges.FeKEdge attribute)
(xanespy.edges.GeKEdge attribute)
(xanespy.edges.LMOMnKEdge attribute)
(xanespy.edges.NCACobaltKEdge attribute)
(xanespy.edges.NCACobaltLEdge attribute)
(xanespy.edges.NCANickelKEdge attribute)
(xanespy.edges.NCANickelLEdge attribute)
(xanespy.edges.OKEdge attribute)
(xanespy.fitting.Curve attribute)
(xanespy.fitting.Gaussian attribute)
(xanespy.fitting.KCurve attribute)
(xanespy.fitting.L3Curve attribute)
(xanespy.fitting.LinearCombination attribute)
NamedTuple() (xanespy.fitting.Curve method)
NCACobaltKEdge (class in xanespy.edges)
NCACobaltLEdge (class in xanespy.edges)
NCANickelKEdge (class in xanespy.edges)
NCANickelKEdge61 (class in xanespy.edges)
NCANickelKEdge62 (class in xanespy.edges)
NCANickelLEdge (class in xanespy.edges)
new_axes() (in module xanespy.plots)
new_image_axes() (in module xanespy.plots)
NMCNickelKEdge29 (class in xanespy.edges)
NoParticleError
normalize() (xanespy.edges.Edge method)
(xanespy.edges.KEdge method)
normalize_k_edge() (in module xanespy.xanes_math)
nproc() (in module xanespy.utilities)
num_energies (xanespy.xanes_frameset.XanesFrameset attribute)
num_images() (xanespy.xradia.XRMFile method)
num_timesteps (xanespy.xanes_frameset.XanesFrameset attribute)
O
OKEdge (class in xanespy.edges)
ole_value() (xanespy.xradia.XRMFile method)
open_file() (xanespy.txmstore.TXMStore method)
open_files() (in module xanespy.importers)
optical_depth_mean (xanespy.txmstore.TXMStore attribute)
optical_depths (xanespy.txmstore.TXMStore attribute)
original_positions (xanespy.txmstore.TXMStore attribute)
P
parallel_map() (in module xanespy.utilities)
param_names (xanespy.fitting.Curve attribute)
(xanespy.fitting.Gaussian attribute)
(xanespy.fitting.KCurve attribute)
(xanespy.fitting.L3Curve attribute)
(xanespy.fitting.LinearCombination attribute)
parent_group() (xanespy.txmstore.TXMStore method)
parent_name (xanespy.xanes_frameset.XanesFrameset attribute)
particle_labels (xanespy.txmstore.TXMStore attribute)
particle_labels() (in module xanespy.xanes_math)
particle_regions() (xanespy.xanes_frameset.XanesFrameset method)
particle_series() (xanespy.xanes_frameset.XanesFrameset method)
Pixel (class in xanespy.utilities)
pixel_size() (xanespy.xanes_frameset.XanesFrameset method)
pixel_sizes (xanespy.txmstore.TXMStore attribute)
pixel_to_xy() (in module xanespy.utilities)
pixel_unit (xanespy.txmstore.TXMStore attribute)
pixel_unit() (xanespy.xanes_frameset.XanesFrameset method)
plot_composite_map() (in module xanespy.plots)
plot_frame() (xanespy.xanes_frameset.XanesFrameset method)
plot_histogram() (xanespy.xanes_frameset.XanesFrameset method)
plot_kedge_fit() (in module xanespy.plots)
plot_map() (xanespy.xanes_frameset.XanesFrameset method)
plot_map_pixel_spectra() (xanespy.xanes_frameset.XanesFrameset method)
plot_mean_frame() (xanespy.xanes_frameset.XanesFrameset method)
plot_pixel_spectra() (in module xanespy.plots)
plot_signal_map() (xanespy.xanes_frameset.XanesFrameset method)
plot_signals() (xanespy.xanes_frameset.XanesFrameset method)
plot_spectra() (in module xanespy.plots)
plot_spectra_as_map() (in module xanespy.plots)
plot_spectrum() (in module xanespy.plots)
(xanespy.xanes_frameset.XanesFrameset method)
plot_txm_histogram() (in module xanespy.plots)
plot_txm_intermediates() (in module xanespy.plots)
plot_txm_map() (in module xanespy.plots)
position (class in xanespy.utilities)
position() (xanespy.beamlines.Zoneplate method)
post_edge (xanespy.edges.CuKEdge attribute)
(xanespy.edges.Edge attribute)
,
[1]
(xanespy.edges.FeKEdge attribute)
(xanespy.edges.GeKEdge attribute)
(xanespy.edges.NCACobaltKEdge attribute)
(xanespy.edges.NCACobaltLEdge attribute)
(xanespy.edges.NCANickelKEdge attribute)
(xanespy.edges.NCANickelLEdge attribute)
(xanespy.edges.OKEdge attribute)
pre_edge (xanespy.edges.CuKEdge attribute)
(xanespy.edges.Edge attribute)
,
[1]
(xanespy.edges.FeKEdge attribute)
(xanespy.edges.GeKEdge attribute)
(xanespy.edges.NCACobaltKEdge attribute)
(xanespy.edges.NCACobaltLEdge attribute)
(xanespy.edges.NCANickelKEdge attribute)
(xanespy.edges.NCANickelLEdge attribute)
(xanespy.edges.OKEdge attribute)
prepare_p0() (in module xanespy.fitting)
print_ole() (xanespy.xradia.XRMFile method)
prog() (in module xanespy.utilities)
R
read_metadata() (in module xanespy.importers)
rebin_image() (in module xanespy.importers)
reference_file (xanespy.xradia.XRMFile attribute)
references (xanespy.txmstore.TXMStore attribute)
RefinementError
regions (xanespy.edges.Edge attribute)
,
[1]
(xanespy.edges.FeKEdge attribute)
(xanespy.edges.GeKEdge attribute)
(xanespy.edges.LMOMnKEdge attribute)
(xanespy.edges.NCACobaltLEdge attribute)
(xanespy.edges.NCANickelKEdge attribute)
(xanespy.edges.NCANickelKEdge61 attribute)
(xanespy.edges.NCANickelKEdge62 attribute)
(xanespy.edges.NCANickelLEdge attribute)
(xanespy.edges.NMCNickelKEdge29 attribute)
register_correlations() (in module xanespy.xanes_math)
register_template() (in module xanespy.xanes_math)
relative_positions (xanespy.txmstore.TXMStore attribute)
remove_extra_spines() (in module xanespy.plots)
replace_dataset() (xanespy.txmstore.TXMStore method)
resample_image() (in module xanespy.xanes_math)
rows (xanespy.utilities.shape attribute)
S
sample_position() (xanespy.xradia.XRMFile method)
scale_normalizer() (in module xanespy.plots)
sector8_xanes_script() (in module xanespy.beamlines)
segment_materials() (xanespy.xanes_frameset.XanesFrameset method)
segments (xanespy.txmstore.TXMStore attribute)
set_axes_color() (in module xanespy.plots)
set_outside_ticks() (in module xanespy.plots)
shape (class in xanespy.utilities)
ShapeMismatchError
shell (xanespy.edges.CuKEdge attribute)
(xanespy.edges.FeKEdge attribute)
(xanespy.edges.GeKEdge attribute)
(xanespy.edges.KEdge attribute)
(xanespy.edges.LEdge attribute)
(xanespy.edges.NCACobaltKEdge attribute)
(xanespy.edges.NCANickelKEdge attribute)
(xanespy.edges.OKEdge attribute)
signal_map (xanespy.txmstore.TXMStore attribute)
signal_method (xanespy.txmstore.TXMStore attribute)
signal_weights (xanespy.txmstore.TXMStore attribute)
signals (xanespy.txmstore.TXMStore attribute)
spectra() (xanespy.xanes_frameset.XanesFrameset method)
spectrum() (xanespy.xanes_frameset.XanesFrameset method)
ssrl6_xanes_script() (in module xanespy.beamlines)
stage_transformations() (xanespy.xanes_frameset.XanesFrameset method)
starttime() (xanespy.xanes_frameset.XanesFrameset method)
(xanespy.xradia.XRMFile method)
starttimes() (xanespy.xradia.XRMFile method)
store() (xanespy.xanes_frameset.XanesFrameset method)
subtract_surroundings() (xanespy.xanes_frameset.XanesFrameset method)
T
timestamps (xanespy.txmstore.TXMStore attribute)
timestamps() (xanespy.xanes_frameset.XanesFrameset method)
timestep_names (xanespy.txmstore.TXMStore attribute)
(xanespy.xanes_frameset.XanesFrameset attribute)
transform_images() (in module xanespy.xanes_math)
transformation_matrices() (in module xanespy.xanes_math)
TXMDataset (class in xanespy.txmstore)
TXMStore (class in xanespy.txmstore)
TXRMFile (class in xanespy.xradia)
U
um_per_pixel() (xanespy.xradia.XRMFile method)
V
validate_parent_group() (xanespy.txmstore.TXMStore method)
VERSION (xanespy.txmstore.TXMStore attribute)
vertical (xanespy.utilities.Pixel attribute)
vertical_bin (xanespy.xradia.XRMFile attribute)
W
whiteline_fit (xanespy.txmstore.TXMStore attribute)
whiteline_max (xanespy.txmstore.TXMStore attribute)
write_scaninfo_header() (in module xanespy.beamlines)
X
x (xanespy.beamlines.DetectorPoint attribute)
(xanespy.beamlines.ZoneplatePoint attribute)
(xanespy.utilities.position attribute)
(xanespy.utilities.xycoord attribute)
XanesFrameset (class in xanespy.xanes_frameset)
XanesMathError
xanespy (module)
xanespy.beamlines (module)
xanespy.edges (module)
xanespy.exceptions (module)
xanespy.fitting (module)
xanespy.importers (module)
xanespy.plots (module)
xanespy.txmstore (module)
xanespy.utilities (module)
xanespy.xanes_frameset (module)
xanespy.xanes_math (module)
xanespy.xradia (module)
XRMFile (class in xanespy.xradia)
XRMProperty (class in xanespy.xradia)
xy_to_pixel() (in module xanespy.utilities)
xycoord (class in xanespy.utilities)
Y
y (xanespy.beamlines.DetectorPoint attribute)
(xanespy.beamlines.ZoneplatePoint attribute)
(xanespy.utilities.position attribute)
(xanespy.utilities.xycoord attribute)
Z
z (xanespy.beamlines.DetectorPoint attribute)
(xanespy.beamlines.ZoneplatePoint attribute)
(xanespy.utilities.position attribute)
Zoneplate (class in xanespy.beamlines)
ZoneplatePoint (class in xanespy.beamlines)
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Xanespy 0.4.0 documentation
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